PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01096g00316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 475aa MW: 51807.6 Da PI: 8.9716 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Peaxi162Scf01096g00316.1 56 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 100 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 50 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.476 | 51 | 105 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.6E-17 | 54 | 103 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-13 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 56 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 56 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-10 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
DQSGESGLDS IHSRRTQISS DVGASSARSI QLKEQVASAD EYAPKVRKPY TITKQRERWT 60 EEEHKKFLEA LKLYGRAWRR IEEHVGTKTA VQIRSHAQKF FSKVVRESNN DDTSSAKPIE 120 IPPPRPKRKP MHPYPRKLAT PIKSGTPVPE KSTRSVTPNM STSEQENQSP TSVLSAHGSD 180 ALGMGDSSKR SGSASPVSSA GGGNSGGFVL SESPNFISEN SSSPAQANAS ANPENKACVK 240 LELFPQDDDF VKQGSAETSS APRLKLFGKT VLVNESYRPS SPTSGVCKIE PDVNGEAALP 300 TVSWNLKPVN FTASDTECAS STLTRGTPTP FYYLPSQNEN RWSKECASAS LPCIQVLNPI 360 PIKGRPLFND KDLEDKQNQK EGSSTGSNTE PVGAEISEDK NMDIETQSSQ HPLDKVGKTL 420 SSFKRSETPS LVQRASSSKR MKGFVPYKRC LAESGINNST LTGEEREEQR TRLCL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019224952.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X1 | ||||
TrEMBL | A0A1J6J4M0 | 0.0 | A0A1J6J4M0_NICAT; Protein reveille 1 | ||||
STRING | XP_009613640.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3185 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-53 | MYB_related family protein |