PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01009g00222.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 407aa    MW: 46629 Da    PI: 5.0394
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01009g00222.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-35141052102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+ye+++d++++ ++sws++++sf+v+++ +fa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F
  Peaxi162Scf01009g00222.1  14 FIAKIYEMVDDPSTDAIVSWSSSNRSFIVWNPPDFARELLPKYFKHNNFSSFIRQLNTYGFRKTDPEQ---------WEFANEDF 89 
                               9**************************************************************99988.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                +++ +ll++i+r+k 
  Peaxi162Scf01009g00222.1  90 LRDQPHLLKNIHRRKP 105
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-39598IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDEAACSTNA LPPFIAKIYE MVDDPSTDAI VSWSSSNRSF IVWNPPDFAR ELLPKYFKHN  60
NFSSFIRQLN TYGFRKTDPE QWEFANEDFL RDQPHLLKNI HRRKPVHSHS TQNLHSLPST  120
LNESERQAFK EDIENLKHEN ELLHLDLRRR KQDHQGLELK MQVFTERVQH VKHRQKNMLS  180
TLAQTISKPG LALSLMPQLE MNERKRRLPG NSYLYSETGL EDNQVCTSQV MTRENKDPTS  240
LLTFNKELLD QLEYSLTFWE NVLHDTDQSG MRRSSSVDLD ESISCADSPA ISYPQLNVDI  300
GSKFSAIDMN SEPNGNTIPE VAPPDDQVAV VGTATNVPTG VNDVFWEQFL TENPGSTDAP  360
EVKPERRDTD CEEAESQTVE HGKFWWKMKT VNSLAEQLGH LTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-26410319129Heat shock factor protein 1
5d5v_B6e-26410319129Heat shock factor protein 1
5d5v_D6e-26410319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253075.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253077.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253078.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253079.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_019253080.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A1J6IT180.0A0A1J6IT18_NICAT; Heat stress transcription factor a-4a
STRINGXP_009590974.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-111heat shock transcription factor A4A