PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00981g00419.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family SBP
Protein Properties Length: 211aa    MW: 23601.3 Da    PI: 9.9491
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00981g00419.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.6e-4173149177
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               +Cq+e+C+adls+ak+yhrrhkvCe h+ka++v+v+gl+qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk +
  Peaxi162Scf00981g00419.1  73 CCQAEKCSADLSDAKQYHRRHKVCEYHAKAQAVVVAGLRQRFCQQCSRFHELTEFDESKRSCRRRLAGHNERRRKIS 149
                               6*************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3366135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.26571148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-3873151IPR004333Transcription factor, SBP-box
PfamPF031105.5E-3274147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
METAGHHHQS SKLIINQLKS MENDELLVIS TCEVEKKKRA TSCINNITTT NNNHNNKKGS  60
SNIGGSSSSS LKCCQAEKCS ADLSDAKQYH RRHKVCEYHA KAQAVVVAGL RQRFCQQCSR  120
FHELTEFDES KRSCRRRLAG HNERRRKISS SSSSAESNGT IAEGSSRSKL GSGTINNAHH  180
QLNKDINNMC GQVDDRGRIQ INATYKNFHL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3964147184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2606351e-107KP260635.1 Nicotiana tabacum SBP-box 4 (SPL4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626190.12e-73PREDICTED: squamosa promoter-binding-like protein 4
RefseqXP_016462352.12e-73PREDICTED: squamosa promoter-binding-like protein 4
TrEMBLA0A2K9ZY651e-151A0A2K9ZY65_PETHY; Squamosa promoter binding-like protein 4b
STRINGXP_009626190.18e-73(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.16e-40squamosa promoter binding protein-like 5