PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00962g00019.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 265aa MW: 29833.9 Da PI: 9.8956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00962g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.9	1.6e-39	14	122	1	112
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF+Ptdeelvv+yLk+kv + +l++ ++i+evd+yk++PwdLp e+e yfFs+r+ ky++gkr+nrat+sgyWka Peaxi162Scf00962g00019.1 14 LPPGFRFRPTDEELVVQYLKRKVFSFPLPA-SIIPEVDVYKSDPWDLPGD---LEQERYFFSTREVKYRSGKRSNRATNSGYWKA 94 79**************************.89***********54...46799*********************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgr 112 tg dk+++s +++++glkktLvfy+++ Peaxi162Scf00962g00019.1 95 TGIDKQIVSFrGQQVIGLKKTLVFYREN 122 ***997577779*******754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-44	10	134	IPR003441	NAC domain
PROSITE profile	PS51005	45.181	14	174	IPR003441	NAC domain
Pfam	PF02365	4.3E-20	15	121	IPR003441	NAC domain
SuperFamily	SSF101941	9.81E-44	162	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEKLNFVKNG VLRLPPGFRF RPTDEELVVQ YLKRKVFSFP LPASIIPEVD VYKSDPWDLP 60 GDLEQERYFF STREVKYRSG KRSNRATNSG YWKATGIDKQ IVSFRGQQVI GLKKTLVFYR 120 ENLNTVAGPI GLCTSIVLLI LNLILLKPKT TLPSIILTSD VLQENWVLCR IFLKNKGSSK 180 DADDNMTHKI SNSRKTGATN SENKKKPAFY NFMAKENESL NGVAASSSFS GSSGITEQTT 240 NQPDDHEESS SCFNSFTTSR TNQLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-37	12	180	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-37	12	180	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-37	12	180	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-37	12	180	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-37	12	180	15	171	NAC domain-containing protein 19
4dul_B	1e-37	12	180	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436915.1	1e-117	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	6e-74	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S3XAF5	1e-115	A0A1S3XAF5_TOBAC; NAC domain-containing protein 83-like
STRING	XP_009590289.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	9e-73	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]