PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00915g00029.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 323aa    MW: 35667.7 Da    PI: 4.6761
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00915g00029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.51.9e-37261162101
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y+++ed++++++isw+e+g+sf+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F
  Peaxi162Scf00915g00029.1  26 FLTKTYQLVEDQSIDDIISWNEDGSSFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCF 101
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkk 101
                               +kg+k+ll++i+r+k
  Peaxi162Scf00915g00029.1 102 RKGEKSLLRDIQRRK 116
                               *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5822115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.36E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.8E-3923115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3326115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSPPPLVGHG GESPAGEMAR SIPTPFLTKT YQLVEDQSID DIISWNEDGS SFIVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNDC FRKGEKSLLR DIQRRKVLTP  120
IATPCAAAAA AATVAVVPTQ PPRALSTSDS CEEQVVSSNS SPGSTTELLG ENERLRKENL  180
QLNKELTQMK SLCGNIYSMM SNYADSSSSN GNNNQSAESI SPTLQPLDLL PTNRTNDEPA  240
ICGGDGGNRA EPDDVQARLF GISLGMKKRV RESEDLAAEH DQELRLQQPG MDVKSEPLDQ  300
NEGENEGTPW LIQCSGRNQR VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-26711516129Heat shock factor protein 1
5d5v_B9e-26711516129Heat shock factor protein 1
5d5v_D9e-26711516129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603015.11e-170PREDICTED: heat stress transcription factor B-2b
RefseqXP_009603016.11e-170PREDICTED: heat stress transcription factor B-2b
RefseqXP_009603017.11e-170PREDICTED: heat stress transcription factor B-2b
RefseqXP_016505355.11e-170PREDICTED: heat stress transcription factor B-2b-like
RefseqXP_016505356.11e-170PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9SCW43e-91HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1S4CW651e-169A0A1S4CW65_TOBAC; heat stress transcription factor B-2b-like
STRINGXP_009603015.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-80heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]