PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00907g00221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 18118.7 Da PI: 6.127 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.4 | 7.8e-11 | 48 | 133 | 6 | 96 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 t+ v + ++lp+k +e ++++ + ++ + We+++ y +s++ + + Wk+F+++n+Lk+gD +vF+l++ s+ Peaxi162Scf00907g00221.1 48 TKTAVKPHYTMYLPRKMSKEL--PPAGAPAVLIY--GRKNWEMNF-YGANSNGKFSPTEWKKFADDNNLKVGDGLVFELSECSTS 127 555666677788888887666..23333234444..468888888.767777777888********************9854555 PP ..EEEE CS B3 91 elvvkv 96 + ++kv Peaxi162Scf00907g00221.1 128 KIHFKV 133 555554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.61E-14 | 39 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-12 | 40 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.547 | 43 | 139 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.08E-15 | 46 | 137 | No hit | No description |
SMART | SM01019 | 3.0E-5 | 47 | 139 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-9 | 47 | 132 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MERRLNLSDE SAKESMKMPE YESSGIKEID EGLYWPLSGK PYVDMILTKT AVKPHYTMYL 60 PRKMSKELPP AGAPAVLIYG RKNWEMNFYG ANSNGKFSPT EWKKFADDNN LKVGDGLVFE 120 LSECSTSKIH FKVMILRGDF PSELLPEEEG ASHDHPIRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786634.1 | 1e-72 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_016490571.1 | 1e-72 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1S4BNV1 | 3e-71 | A0A1S4BNV1_TOBAC; B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1U7XI63 | 3e-71 | A0A1U7XI63_NICSY; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009786634.1 | 5e-72 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-10 | B3 family protein |