PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00896g00014.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 508aa    MW: 57609.4 Da    PI: 4.8053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00896g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.71.9e-821224942373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd.....pmqRlaayfteALaarlar.svselykalppsetseknsseelaa 80 
                               ++lLl  Aea++ g+  la+ ++ rl+++ s+d++     ++ Rla yft++L  ++++ ++ el ++ +  +++  ++s++++a
  Peaxi162Scf00896g00014.1 122 TDLLLMGAEAIEVGNYDLASIVVLRLNTILSNDQEngynnTLDRLALYFTQGLLCKILNnNSRELLNQNQLYQSD--STSTSMTA 204
                               5789999**********************777664466679**************99994455555544444443..58888999 PP

                      GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165
                               +++++e+sP++kf+h+taNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +   slRiT+v+  +++++  +++tg+rL
  Peaxi162Scf00896g00014.1 205 FQMLQEISPYVKFAHFTANQAILEATQGSQQVHILDFDIMEGIQWPPLMVDLVERGNLNSSLRITAVVG-DKNNSLCVQKTGKRL 288
                               *******************************************************************99.667999********* PP

                      GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe... 245
                               ++fA+++++pf f+ ++ ++ edl  e+L+v    + +l+ n+v++  +++++  sl +   ++ + +++lsPk+vv+ve+e   
  Peaxi162Scf00896g00014.1 289 QEFADSINLPFMFDQVLLTKEEDL--EKLQVVDsdHNNLIANCVIHQLHMPQRGSSLVK---TFFNGLRRLSPKMVVLVEEElyn 368
                               ***************866665555..888887767999*******9999*988888888...********************755 PP

                      GRAS 246 .adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpv 327
                                ++  s sF+e f+eal++y+++ +s+  +l+     + +++E+e+lg +i + + +   e+     + e+W+e l +  GF+++
  Peaxi162Scf00896g00014.1 369 lTKIPSMSFVEFFCEALHHYTTISESILGGLGGGYkLALRVIEKEFLGARILDSLRQFPCEK----SKRERWSEGLYSlKGFRKI 449
                               4445788********************88887776488999***************999994....44567***997658***** PP

                      GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                               p+s+++++qak+l++ ++  gy v++e+  l l+Wk+rpL ++S W
  Peaxi162Scf00896g00014.1 450 PMSSSNVTQAKHLVSLFS-GGYWVQHEHSKLALCWKSRPLSTASIW 494
                               ******************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.63195476IPR005202Transcription factor GRAS
PfamPF035146.5E-80122494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MIYPFLEYSN FETTTFPWQN PSINNPHCSI QDFVNNVVIN DDVDIEDYFQ TNDTVDMVDF  60
DFIDGDADLF PVQNSQQLSL FSRQQVQVEN TNLSIESQIL GVDNGPHLKL LQHQLMEETS  120
ITDLLLMGAE AIEVGNYDLA SIVVLRLNTI LSNDQENGYN NTLDRLALYF TQGLLCKILN  180
NNSRELLNQN QLYQSDSTST SMTAFQMLQE ISPYVKFAHF TANQAILEAT QGSQQVHILD  240
FDIMEGIQWP PLMVDLVERG NLNSSLRITA VVGDKNNSLC VQKTGKRLQE FADSINLPFM  300
FDQVLLTKEE DLEKLQVVDS DHNNLIANCV IHQLHMPQRG SSLVKTFFNG LRRLSPKMVV  360
LVEEELYNLT KIPSMSFVEF FCEALHHYTT ISESILGGLG GGYKLALRVI EKEFLGARIL  420
DSLRQFPCEK SKRERWSEGL YSLKGFRKIP MSSSNVTQAK HLVSLFSGGY WVQHEHSKLA  480
LCWKSRPLST ASIWVPKSSP SPSSSFSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-4412949826381Protein SCARECROW
5b3h_D6e-4412949826381Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606529.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3YVQ60.0A0A1S3YVQ6_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009606529.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-49GRAS family protein