PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00888g00037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 370aa MW: 42078.9 Da PI: 7.2149 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.5 | 1.8e-12 | 206 | 272 | 2 | 67 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 Yn YAk + Fs+r++++ s +++ ei++r++vC + g+++++k ++++++ r+++r +C+ak+ Peaxi162Scf00888g00037.1 206 IYNCYAKGISFSIRRDRNFGSaEHHMEIYRRDYVCHRAGSPRPQKVVEKERQQDRKSSRYNCNAKMA 272 7*****************999778899******************99999999************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-5 | 29 | 56 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.887 | 29 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF03101 | 1.9E-9 | 206 | 272 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-19 | 292 | 368 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MTSPPDIDQR NSFPGINNDP VHLAGCTVRY RGFRRRLWGR YTEEIRDPQS KKRGGLNAPR 60 REAAHAEVES SHSSDRLATP GASYFSHEHG QPSMIPGLTQ TQYSQLLMLL QQSNVSNGSD 120 SPRMAAAHVG VESNFVGENT AMKVSFDSRL DVSRTHCPCG DNECYIHGDI VGGTSERDNE 180 ELRQEDFDIG NTDLHKEFFF NSDDEIYNCY AKGISFSIRR DRNFGSAEHH MEIYRRDYVC 240 HRAGSPRPQK VVEKERQQDR KSSRYNCNAK MAENIIWAFG DSIRAYELFG DVVVFNTTYR 300 LNRYEMPLGV WVGVNNHGNT IFFGCVLLRN EKASSFSWAW KSLLRLMNGK HPQTILTDQD 360 LGLAEAIAHK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7183 | 7 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-35 | FAR1-related sequence 11 |