PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00839g00233.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 367aa    MW: 39668.1 Da    PI: 5.0989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00839g00233.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12290335655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR +i +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  Peaxi162Scf00839g00233.1 290 SIAERVRRTKISDRMRRLQELVPNM----DKQTNTADMLDFAVDYIKELE 335
                               689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15287341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.42E-12288339No hitNo description
Gene3DG3DSA:4.10.280.104.7E-14289340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-9290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDQSRFQQQP MTSGLTRYRS APSSYFSSLL SNNPTSASGG SGSGIISGGC GYARDDFMQN  60
SNNSSSDIEQ VFARFVASID NRDSNSGSLV SNQQNLENST CLTPVSIGGG VGAGSGNSNL  120
ARYNSSPAGF FAQINIENEY GIRGIGSYGT GTSATTEASL STPRRTQVGF STGKPPASPG  180
LMPRISEIGD KGVEESSTSN ERKNDESCIT DTDFPMPSWE DSHILSDDFL KAEDIEIEPF  240
SHQNNEGLGR PPLPLAHHMS LPTSTMEKLL QDSVPLNVRA KRGCATHPRS IAERVRRTKI  300
SDRMRRLQEL VPNMDKQTNT ADMLDFAVDY IKELEKQVKY VLASGAKGIT FDAMILELMI  360
GVLQPAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754505e-45HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755235e-45HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240992.11e-158PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A1J6JPV11e-157A0A1J6JPV1_NICAT; Transcription factor bhlh130
STRINGXP_009620426.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.18e-51bHLH family protein