PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00802g00233.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 582aa MW: 67680.4 Da PI: 7.6617

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00802g00233.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.3e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v++++ Peaxi162Scf00802g00233.1 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgIAQWYVSQFS 154 69******************8888.**************************************998756789*** PP FAR1 83 leHnHela 90 + HnHel Peaxi162Scf00802g00233.1 155 NVHNHELL 162 ****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-8	229	276	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	456	491	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-6	464	490	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-4	466	493	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MAAKSLSNIW IRRQQCPCGD WKCYIKTDGD DQPANISQTT KCETTSLSTS QNVVFTPYVG 60 QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGIAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTLLFFS FVQSFVQFMR 240 GRQPQTIVTD IDSGLRDAMA SEMPNTKHVI CLWQVLSKLS SWFSLPLGLQ YADFKSEFDI 300 LCRLENVEDF EHQWNHLVAR FQLGSDKHIA LLFSYRTSWP ISYMRNFFLA RTMTIEYSKL 360 VETFMKNILS PQSNILLFFE QVCLVSNFGN HKNESQLYMP AKTCLPLEEH ARSVLTPYAF 420 SVIQHEIVLS MQYAITEMAN SSYLVRHYKK MEAECLVIWI PEDEQVHCSC KEFEHSGILC 480 RHSIRVLVSK NYFQIPEKYF PLRWRLESSL DPLDNSVIQS SANEYSQVFH ALSGSLYSES 540 LISKERFTYV HRELKQLLEH VQNMPTVDEV ALRSAPINVS EL

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MAAKSLSNIW IRRQQCPCGD WKCYIKTDGD DQPANISQTT KCETTSLSTS QNVVFTPYVG  60
QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGIAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTLLFFS FVQSFVQFMR  240
GRQPQTIVTD IDSGLRDAMA SEMPNTKHVI CLWQVLSKLS SWFSLPLGLQ YADFKSEFDI  300
LCRLENVEDF EHQWNHLVAR FQLGSDKHIA LLFSYRTSWP ISYMRNFFLA RTMTIEYSKL  360
VETFMKNILS PQSNILLFFE QVCLVSNFGN HKNESQLYMP AKTCLPLEEH ARSVLTPYAF  420
SVIQHEIVLS MQYAITEMAN SSYLVRHYKK MEAECLVIWI PEDEQVHCSC KEFEHSGILC  480
RHSIRVLVSK NYFQIPEKYF PLRWRLESSL DPLDNSVIQS SANEYSQVFH ALSGSLYSES  540
LISKERFTYV HRELKQLLEH VQNMPTVDEV ALRSAPINVS EL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253633	0.0	AC253633.6 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-4f18 map 7, complete sequence.
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001331635.1	0.0	FAR1-related sequence 10
Swissprot	Q9LKR4	1e-126	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0B0Q0U7	0.0	A0A0B0Q0U7_GOSAR; Far1-related sequence 10-like protein
STRING	Solyc07g045520.2.1	0.0	(Solanum lycopersicum)
STRING	XP_009624952.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-129	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]