PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00740g00328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 28714.5 Da PI: 8.4848 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.4e-39 | 31 | 91 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Peaxi162Scf00740g00328.1 31 KEQAVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 91 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-28 | 25 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.7E-34 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.068 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MDTSQWPQGI GVVKTVEPSK TVQERKPRPQ KEQAVNCPRC NSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SFNNNNNSSY SNNSSSSTSS SSKKLPDLTT 120 PKINEPHHDL NFSNISEFMA LPFGHDHNKG LHLMNPNSTT FLDSNTLFSS TTGLPNLHDL 180 KPTLNFSLDH GFEHNGYGNL QGAAQEITGA KLFFPLDDLK TVSTDPNDHH EFEQNKGHHH 240 QAAESNGFWN GMLGGGSS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312901.1 | 1e-106 | dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_009801284.1 | 1e-106 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Swissprot | Q43385 | 1e-51 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A068PXR9 | 1e-104 | A0A068PXR9_TOBAC; Dof zinc finger protein | ||||
TrEMBL | A0A1U7YPX6 | 1e-104 | A0A1U7YPX6_NICSY; dof zinc finger protein DOF1.8-like | ||||
STRING | XP_009801284.1 | 1e-105 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61850.3 | 2e-45 | Dof family protein |