PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00740g00141.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Nin-like | ||||||||
Protein Properties | Length: 222aa MW: 26241 Da PI: 6.7965 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.1 | 5.6e-26 | 88 | 138 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++++F+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl Peaxi162Scf00740g00141.1 88 TDTLELDEIQRFFHVPITKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 138 6899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.666 | 78 | 159 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-22 | 90 | 138 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDSQSLNVLK VENQNDQFDW LYSEVEHLPS PFGTWQQDSR LSNGSLFNFE LDPYQFPNDV 60 QNTHLPFFGL EDFEEMIQEL GTGRQKKTDT LELDEIQRFF HVPITKAAKE LRVGLTVLKK 120 RCRELNIMRW PHRKIKSLQS LIDNVKEMGL ASSEVKMLEE HQRMLEKVPE MELTERTKKL 180 RQACFKANYK KRRAMAATFL DISEHIKVSN KKLCRSYLDE EE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016471868.1 | 9e-97 | PREDICTED: protein RKD4-like | ||||
Swissprot | Q9LVU8 | 5e-42 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A1S4A5E2 | 2e-95 | A0A1S4A5E2_TOBAC; protein RKD4-like | ||||
STRING | XP_009589276.1 | 1e-95 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12143 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-44 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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