PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00717g00318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20867.8 Da PI: 9.4188 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.7 | 7.6e-71 | 9 | 164 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 ++sse+vCyv+CnfCntilavsvP + +f++vt+rCGhC++llsvn+ q l+ ++ ++l+++++n++ +++ Peaxi162Scf00717g00318.1 9 TTSSERVCYVHCNFCNTILAVSVPCSNMFNIVTIRCGHCANLLSVNMGSLLQPLPLQDL----------QKLQKQQSNVENANKA 83 6799***************************************************9994..........4444455555554444 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+s+ + ++ e+ pr p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Peaxi162Scf00717g00318.1 84 CGSSSSSKCNRFSAIHSPENEPRLTP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 45555444444445667788888888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.0E-74 | 11 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.02E-8 | 104 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 112 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSHDMTSSTT SSERVCYVHC NFCNTILAVS VPCSNMFNIV TIRCGHCANL LSVNMGSLLQ 60 PLPLQDLQKL QKQQSNVENA NKACGSSSSS KCNRFSAIHS PENEPRLTPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLESNK QAKLDHAAGP 180 HKSLGLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ767669 | 0.0 | KJ767669.1 Nicotiana tabacum FAS protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234442.1 | 1e-105 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q9XFB0 | 1e-72 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J6KYN5 | 1e-104 | A0A1J6KYN5_NICAT; Putative axial regulator yabby 2 | ||||
STRING | XP_009798278.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-69 | YABBY family protein |
Publications ? help Back to Top | |||
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