PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00713g00619.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 483aa    MW: 54676.6 Da    PI: 6.8148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00713g00619.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055212234123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C+k+F+++  L  H  +H
  Peaxi162Scf00713g00619.1 212 FECKECKKVFNSHQALGGHRASH 234
                               89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003557.41436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5591436IPR007087Zinc finger, C2H2
PfamPF139120.0021436IPR007087Zinc finger, C2H2
SuperFamilySSF576679.51E-51436No hitNo description
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576679.51E-580104No hitNo description
SuperFamilySSF576673.48E-6211234No hitNo description
SMARTSM003550.036212234IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-11212236IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.554212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-6287307No hitNo description
PfamPF139122.4E-6291307IPR007087Zinc finger, C2H2
SMARTSM00355130292321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MACIDPEQKS NFKHYCRVCK KGFMCGRALG GHMRAHGIGD ESAYLDDDDD DQDSDWEDMP  60
GGSDKGDRRR MYQLRANLNR LKSTKVCENC GKEFFSWKSF LEHGKCSSDD AESLVSSPDS  120
GGEEYIGGRK CYGWSKRKRS LRTKIESFSS RYIKVDPLSV EPEKSCVSAI KEERRNPMTY  180
LTPLIYRDKD LRRKSFFILP LDKAKGSSKG LFECKECKKV FNSHQALGGH RASHKKVKGC  240
YAAKQDQLDD SLADHDDMIQ HEDYFKGSKS SSYQFEQGSS LAGASRRKSK VHECSICHKV  300
FSTGQALDSS TVAAKYHYHN HNPLEQINEK LTLEKQDPLD LNIPADNQVM SRISQLEPWN  360
PLSFKISPDI HLMHPWSKND GNKQAKDDVI YPNNYDHPYE ANDDDNKKNH DISNNINNNS  420
DKNNVNNNVR DNETQSVDDD DEADSKLKLA KLTDLKDINT SSGNHSQWLQ VGIGPIPEVG  480
ADS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231156.10.0zinc finger protein ZAT4-like
TrEMBLA0A3Q7EKB80.0A0A3Q7EKB8_SOLLC; Uncharacterized protein
STRINGSolyc01g090830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-19C2H2-like zinc finger protein