PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00700g00732.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 234aa    MW: 26875.5 Da    PI: 8.3627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00700g00732.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
  Peaxi162Scf00700g00732.1 14 RGPWTAEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                              89********************************************97 PP
2Myb_DNA-binding506.9e-1668110246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++T++E+e++++ +k  G++ W++Ia+ ++ gRt++++k++w++
  Peaxi162Scf00700g00732.1  68 DNFTPQEEEIILEFHKTVGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                               68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.669965IPR017930Myb domain
SuperFamilySSF466891.84E-3111108IPR009057Homeodomain-like
SMARTSM007179.1E-151363IPR001005SANT/Myb domain
PfamPF002492.6E-161461IPR001005SANT/Myb domain
CDDcd001671.18E-111661No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.97966116IPR017930Myb domain
PfamPF002492.4E-1469110IPR001005SANT/Myb domain
CDDcd001676.65E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRPPCCDKT NVKRGPWTAE EDAKILAYVA SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPQEEEIILE FHKTVGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG  120
IDPVTHKPFS QVFAEYGKIC NLPIQNARNH IILSNNSTGK NQVFQEPNQF QFSNETPHDT  180
IQTHSFSEKE NPSCVQVTQA EEKKSVDSFV DNILARDKQM LLDYPPLLDV YLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469629e-52AC246962.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence.
GenBankAC2470259e-52AC247025.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence.
GenBankHG9754429e-52HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755159e-52HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342308.11e-120PREDICTED: transcription factor MYB35
SwissprotQ9LSI76e-77MYB35_ARATH; Transcription factor MYB35
TrEMBLM1AG011e-119M1AG01_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000220091e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-79MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]