PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00689g10026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 261aa MW: 28516.6 Da PI: 6.296 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 46.8 | 6.2e-15 | 58 | 85 | 36 | 62 |
zf-Dof 36 C.rryWtkGGalrnvPvGggrrknkkss 62 C rryWtkGG+lrn+PvGgg+rknkk s Peaxi162Scf00689g10026.1 58 CpRRYWTKGGTLRNIPVGGGCRKNKKIS 85 549**********************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-8 | 50 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-9 | 58 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MGITSLQACM DSSNWLQDTI HEETELDSTS SPSDDIFTCS RPLMERKLRP PHDKPINCPR 60 RYWTKGGTLR NIPVGGGCRK NKKISTKKLS NDTTHQINSS SNQTSTISFP EMAFSHFNNF 120 VGLGNSPSNF MLENNISTPI DFMVGNTSRN QDFIGNVDLG MINGYGEISG NGINGQNFHA 180 GICSTFGMSM DGNNFGNIKY EGHNTIDDVK PNPNILSLEW HDHQGCSNAG NKEPFGYFSG 240 GLGSWTGLMN GYGSSATNPL I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009599905.1 | 1e-122 | PREDICTED: dof zinc finger protein DOF5.6-like | ||||
TrEMBL | A0A1S4CAV1 | 1e-120 | A0A1S4CAV1_TOBAC; dof zinc finger protein DOF5.6-like | ||||
STRING | XP_009599905.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4895 | 22 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28510.1 | 9e-12 | Dof family protein |