PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00683g00044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WOX | ||||||||
Protein Properties | Length: 331aa MW: 37661.6 Da PI: 7.4534 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70 | 2.9e-22 | 78 | 137 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Peaxi162Scf00683g00044.1 78 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 137 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.8 | 2.1e-37 | 77 | 139 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Peaxi162Scf00683g00044.1 77 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 139 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.5E-5 | 75 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.18E-12 | 78 | 142 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.2E-20 | 78 | 137 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-9 | 78 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.44E-7 | 79 | 139 | No hit | No description |
PROSITE profile | PS50071 | 11.256 | 83 | 138 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MWMMGYNDSG DFNMPDSFNG RKLRPLMPRI PHVPTATSST NCLRSIHGDN FIALNHHQLG 60 MSEPNKRDYN TQQLVVSSRW NPTPEQLQTL EELYRRGTRT PSAEQIQHIT AQLRRYGKIE 120 GKNVFYWFQN HKARERQKRR RQLESNAAND GGGGDEQSRN NCNVENAERK DSGAGANRTG 180 FEIEQTKNWP SPTNCSTLSP EMMHLSCSPP TPHHHMNNSS TSNTITTTTT IISSPSTPRT 240 MEPKQFPKVK DHLNIFITPF RTDDHSKHSL SEIHGDSQTL ELFPLRSNNE INDENNISEK 300 DDIEISGAVA TSNTNFSGSN YQFFEFLPLK N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU359004 | 0.0 | EU359004.1 Petunia x hybrida MAEWEST protein (WOX1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587628.1 | 1e-172 | PREDICTED: WUSCHEL-related homeobox 1 | ||||
Refseq | XP_016474400.1 | 1e-172 | PREDICTED: WUSCHEL-related homeobox 1-like | ||||
TrEMBL | C0IN07 | 0.0 | C0IN07_PETHY; MAEWEST protein | ||||
STRING | XP_009587628.1 | 1e-171 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 1e-54 | WUSCHEL related homeobox 1 |