PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00672g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 25102 Da PI: 9.8769 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7e-17 | 96 | 146 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g ++AeIrdp kr+r +lg+++t+e+Aa a+++a+ k++g Peaxi162Scf00672g00031.1 96 RYIGVRRRQ-WGTFAAEIRDP---ErKRARLWLGTYDTPEDAALAYDQAAFKFRG 146 699***887.**********7...3347************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-21 | 96 | 155 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.56E-28 | 96 | 156 | No hit | No description |
PROSITE profile | PS51032 | 23.077 | 96 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-12 | 96 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-30 | 96 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 96 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 136 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MNNPVADETF SFPELDLLES IKLHLLNDSD FSDIFAHVIS SSNNAILPNS PSPSIGSSCP 60 SLESNEKSEF DDQEKITIKS PAVVERAAHA PHDWRRYIGV RRRQWGTFAA EIRDPERKRA 120 RLWLGTYDTP EDAALAYDQA AFKFRGSKAR LNFPHLIGSS NTPNPARLTS RRPVRSPEPA 180 SSSSSSSTST TSSQNAGTRK RRIDLINSIA RAKRFCNSWN VQMLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 95 | 159 | 4 | 68 | ATERF1 |
3gcc_A | 2e-22 | 95 | 159 | 4 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016544939.1 | 1e-78 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | M1DZX1 | 4e-78 | M1DZX1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097101 | 6e-79 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-37 | ethylene-responsive element binding factor 13 |