PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00658g00088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 700aa MW: 77932.6 Da PI: 8.2613 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.2e-07 | 591 | 640 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Peaxi162Scf00658g00088.1 591 RRPFSVSEVEALVEAVEQLGTGRWRDVKMRAFdsaDHRTYVDLKDKWKTL 640 678999********************9766668**9***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 5.8E-4 | 386 | 465 | No hit | No description |
SuperFamily | SSF54236 | 1.49E-6 | 393 | 475 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 8.764 | 397 | 467 | IPR000626 | Ubiquitin domain |
CDD | cd01769 | 0.00783 | 401 | 467 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-10 | 583 | 642 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.441 | 586 | 645 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-8 | 590 | 643 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.46E-16 | 592 | 642 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-15 | 592 | 673 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MVSKKRLNCG FTGYQIPAIP KAPRSARKRR PCKKLDDDQI CAFELLAAVA GKLLLESESS 60 ASSNVGALEG KDDPADCRDS SKHGVEDDKA VKSECLDQGS CVESAYIPEA ADPEQNSKNG 120 SSKPYHAENK SSLEHSSTII CSDSLTKDWS DVKLENCKEV NKYGNLRNKM EDESLNLDDP 180 CQIRTVEGTR KQLDDDSKQD KLTVVNNCSV KDPIEKIVNN SNLINSDSSV QLPLYRDKVP 240 CASFVKSRNN VKLGIRDDDE NYFGCYGYST KIRTIRSTSR NTYRRMRRML TSRHWKVAPK 300 LKDCERSYSN DGMKSFCRNR KSMHANERHR LEIPSKRRKL CDHSFAVTYD QEASCESISN 360 SPENGIKKDM ISSPGIQHKG AGASASARNH QKKDPNVKFS IKSFKVPELY IEVPETETIG 420 SLKKTVMEAV TAILGSGIRV GMVLQGKKVR EDNKTLQQAG ISKNGNLDTL GFTLEPSFTN 480 VPLSLPPKDD TPASASYITD QELSRHPPSP VLDSGPTNAL SRPPETKLDK HDESNSELEM 540 SPNNPTDQSA DEAVLDCKAL AIVPPVNEEA VAVVSVNHKS RRCELSQRRT RRPFSVSEVE 600 ALVEAVEQLG TGRWRDVKMR AFDSADHRTY VDLKDKWKTL VHTASIAPQQ RRGEPVPQEL 660 LDRVLAAHSY WSQHQVKQHG KQEADQPLKI VDAQVQNVGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-65 | 576 | 700 | 2 | 121 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785792.1 | 0.0 | PREDICTED: telomere repeat-binding protein 3-like isoform X1 | ||||
TrEMBL | A0A1U7X0V7 | 0.0 | A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1 | ||||
STRING | XP_009785792.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2093 | 17 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 7e-93 | TRF-like 2 |