PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00650g00002.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C3H

Protein Properties

Length: 703aa MW: 77070 Da PI: 6.6873

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00650g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Peaxi162Scf00650g00002.1 281 PCPEFRK-GACRRGDMCEYAHG 301 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.32E-15	59	139	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.99	59	134	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.016	59	89	IPR002110	Ankyrin repeat
Gene3D	G3DSA:1.25.40.20	1.2E-17	59	141	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.3E-10	59	128	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.50E-14	59	141	No hit	No description
PRINTS	PR01415	4.8E-5	60	75	IPR002110	Ankyrin repeat
SMART	SM00248	3.0E-4	94	126	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.315	94	129	IPR002110	Ankyrin repeat
PRINTS	PR01415	4.8E-5	113	127	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	276	302	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	281	303	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	281	301	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	309	339	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	39	311	334	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MNSNHLSVET EDTFASLLEL AANNDAVAFE RWIEHDLSSV HEVGLWYGRQ KGSRQMVLEH 60 RTPLMVAATY GSIDVLKLIL SLPEVDVNQS CGRDKSTALH CAASGGSLNA VDAVKLLIEA 120 GADPNSEDAN GHRPWDVIIA SPKFHSTKSS LENLLKIDTN GECSLRVSTA TSNSNSPPLS 180 PSPPGNRSSS SASDSTSSPR SAKSSDLPVS CTSEKKEYPI DPSLPDIKNS IYSTDEFRMF 240 SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGAC RRGDMCEYAH 300 GVFECWLHPA QYRTRLCKDG TKCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNTSAANA 360 MEFAAAMGFI PGSPSSVPVM SPSPFTPPMS PSANGISNMG WPQPNVPALH LPGSNLQSSR 420 LRSSLNARDI HSEDLNMFPD FDVQQQQFLN EFSCLSQSSM NANSLNRLAH PKTLTPSNLD 480 DLFSTESSSP RYSDQALAQA VFSPTHKSAV FNQFQQQQQS MLSPINTNFS PKNVDNHLLQ 540 GSFGVPSPGR MSPRGMEPIS PMSSRMSMLA QREKQQQFRS LSSRDLGSNA SAVIGSPADT 600 WSQWGSSTGK ADWAVNIEEF GKLKRSSSFE LANNGEEPDL SWVQSLVKES PQEMKDKAAS 660 RMLGLAGSGA DISEGSTSNS KTEQLDQLSA WMEQMKLDKL MAQ

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MNSNHLSVET EDTFASLLEL AANNDAVAFE RWIEHDLSSV HEVGLWYGRQ KGSRQMVLEH  60
RTPLMVAATY GSIDVLKLIL SLPEVDVNQS CGRDKSTALH CAASGGSLNA VDAVKLLIEA  120
GADPNSEDAN GHRPWDVIIA SPKFHSTKSS LENLLKIDTN GECSLRVSTA TSNSNSPPLS  180
PSPPGNRSSS SASDSTSSPR SAKSSDLPVS CTSEKKEYPI DPSLPDIKNS IYSTDEFRMF  240
SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGAC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TKCNRRVCFF AHTQEELRPL YVSTGSAVPS PRSNTSAANA  360
MEFAAAMGFI PGSPSSVPVM SPSPFTPPMS PSANGISNMG WPQPNVPALH LPGSNLQSSR  420
LRSSLNARDI HSEDLNMFPD FDVQQQQFLN EFSCLSQSSM NANSLNRLAH PKTLTPSNLD  480
DLFSTESSSP RYSDQALAQA VFSPTHKSAV FNQFQQQQQS MLSPINTNFS PKNVDNHLLQ  540
GSFGVPSPGR MSPRGMEPIS PMSSRMSMLA QREKQQQFRS LSSRDLGSNA SAVIGSPADT  600
WSQWGSSTGK ADWAVNIEEF GKLKRSSSFE LANNGEEPDL SWVQSLVKES PQEMKDKAAS  660
RMLGLAGSGA DISEGSTSNS KTEQLDQLSA WMEQMKLDKL MAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618285.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_009618286.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_016464875.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464876.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464877.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_018631218.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_018631219.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S3ZKG8	0.0	A0A1S3ZKG8_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009618285.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]