PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00648g00315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 447aa MW: 48768 Da PI: 8.0079 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 123 | 146 | 4 | 26 |
---SGG.GGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrff.artGtCkyGdrCkFaHg 26 +lC+++ + G C+yG++C++ H+ Peaxi162Scf00648g00315.1 123 KLCHNWvNKDGKCPYGAKCRYLHS 146 56777756899************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.775 | 34 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.14 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 119 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-4 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-5 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-6 | 123 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 9.5E-17 | 146 | 282 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 7.1E-6 | 152 | 191 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 3.85E-44 | 154 | 441 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 9.6E-6 | 154 | 191 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.352 | 159 | 200 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 18.326 | 159 | 407 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 178 | 192 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.1E-6 | 178 | 192 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 150 | 231 | 267 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.0059 | 274 | 311 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0084 | 280 | 311 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.313 | 281 | 320 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 4.7E-28 | 283 | 439 | IPR015943 | WD40/YVTN repeat-like-containing domain |
PRINTS | PR00320 | 2.1E-6 | 298 | 312 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0028 | 314 | 351 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0068 | 316 | 350 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.1E-6 | 338 | 352 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4 | 355 | 398 | IPR001680 | WD40 repeat |
SMART | SM00320 | 16 | 401 | 438 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MDIDGSKRVF QRLGPSSSSS QQKSTGPPGP HHQNNAPKVC FHWRNGRCNR YPCPFLHHEL 60 SAPPQNNGIS GSSKRPYGFN DDSNSRGGMR RNTNFNNTWG RNSNGSSSAG GAGGGVVVKK 120 TEKLCHNWVN KDGKCPYGAK CRYLHSWTTG DCFNLLTQLD GHEMVVTGIT LPPGSDKLYS 180 GSKDKTIRLW DCQSGQCAGV VNLDGEVGCI LSEGPWIFVG LTNLVKAWNA QTGTDLSLNG 240 PAGQVYALVI GNDMLLAGTE DGILAWKYNV STNCFEPAAA LKGHTHHVVS LVVGGNRLYS 300 GSMDNSIRVW SLETMQCLQV LTDHTHVVMS VLCWDQFLLS CSLDQTIKVW VANESGNLEV 360 TYTHKEENGL LALCGMHDSE AKPVLLCSCN DNTVRVFDLP SFSERGKLFS KKAVRRIEIG 420 PGGLFFTGDE LGQVRVWQWL TKPSSTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 1e-18 | 156 | 437 | 8 | 320 | Tako8 |
6g6n_A | 1e-18 | 156 | 437 | 8 | 320 | Tako8 |
6g6n_B | 1e-18 | 156 | 437 | 8 | 320 | Tako8 |
6g6n_C | 1e-18 | 156 | 437 | 8 | 320 | Tako8 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019237752.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A1J6K0L1 | 0.0 | A0A1J6K0L1_NICAT; Zinc finger ccch domain-containing protein 48 | ||||
STRING | XP_009626305.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2884 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |