PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00620g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 153aa MW: 18164.6 Da PI: 6.7928 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.2e-13 | 17 | 98 | 10 | 99 |
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k+g l +p +++ ++ g++++e+ l+ + ++W+vkl ++ + +++GW++F+++++L+ D++vF+++g ++f v Peaxi162Scf00620g00013.1 17 GFKHG-LKIPTSYL-KYleGYDQHEHAVLRRAGNKEKEWSVKL--NGWR----FEEGWEKFAEEHDLQLEDVLVFRHEGYMKF--EV 93 45555.********.677988877776666666888*******..6665....99*********************9999999..99 PP EEE-S CS B3 95 kvfrk 99 ++f++ Peaxi162Scf00620g00013.1 94 SIFDS 98 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-18 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.209 | 7 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.73E-16 | 8 | 97 | No hit | No description |
SMART | SM01019 | 3.5E-14 | 10 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-10 | 18 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MKVPPEKPHF FKPIVPGFKH GLKIPTSYLK YLEGYDQHEH AVLRRAGNKE KEWSVKLNGW 60 RFEEGWEKFA EEHDLQLEDV LVFRHEGYMK FEVSIFDSNT HCNRKYPENQ QQEAAHITVE 120 ETNLFHACAL IQFYTTNCFN VQQTVGNNKL FYL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801917.1 | 2e-50 | PREDICTED: B3 domain-containing protein REM10-like isoform X3 | ||||
TrEMBL | A0A1U7YCS5 | 5e-49 | A0A1U7YCS5_NICSY; B3 domain-containing protein REM10-like isoform X3 | ||||
STRING | Solyc08g006240.1.1 | 3e-48 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-24 | B3 family protein |