PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00619g00912.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HSF

Protein Properties

Length: 385aa MW: 45371.1 Da PI: 5.2877

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00619g00912.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	96.7	2.4e-30	77	169	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 F+ k+ye+l d ++++lisws+ng+sf++ d+++fa ++Lp++F+h+n++SF+ QLn YgF+k++ ++ eF+h++F Peaxi162Scf00619g00912.1 77 FVLKIYEMLADVQFNSLISWSRNGTSFIINDHHQFAAQLLPRFFRHNNISSFICQLNSYGFRKINWDK---------FEFQHEWF 152 9**************************************************************999.........67** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 +kgk + l++ikrk+ + Peaxi162Scf00619g00912.1 153 QKGKGQWLKNIKRKSAK 169 ************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.7E-38	73	166	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.24E-27	73	166	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.2E-29	74	166	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.6E-14	77	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.0E-26	77	166	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.6E-14	115	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.6E-14	128	140	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEADKGKSKM TIDISESWYE ELKDVNFDIS MLEDDDQQIQ GDNRNNEVLH GNTATNAHDN 60 GFTTASSRNF QRRPCPFVLK IYEMLADVQF NSLISWSRNG TSFIINDHHQ FAAQLLPRFF 120 RHNNISSFIC QLNSYGFRKI NWDKFEFQHE WFQKGKGQWL KNIKRKSAKK TQGQGEGQQE 180 KQGINEMAAL TMEKEMEEIR EEQLEMKEQI LMLQQQLDIL EKEMEEITRQ ARKDMSYKKA 240 KMLMLLESFF ECKAKQSDEM DDGGEERESG DRGGKGKRKV GEELKEKNER NKKVATDFES 300 DSNLRKMLID EMNMNNLAQE QPDNFMESDA LAETRSQPSH FWTWHWRLTI TECFSLKTTG 360 RGYWVIPVAF YYTHEKMMVP EDLFL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEADKGKSKM TIDISESWYE ELKDVNFDIS MLEDDDQQIQ GDNRNNEVLH GNTATNAHDN  60
GFTTASSRNF QRRPCPFVLK IYEMLADVQF NSLISWSRNG TSFIINDHHQ FAAQLLPRFF  120
RHNNISSFIC QLNSYGFRKI NWDKFEFQHE WFQKGKGQWL KNIKRKSAKK TQGQGEGQQE  180
KQGINEMAAL TMEKEMEEIR EEQLEMKEQI LMLQQQLDIL EKEMEEITRQ ARKDMSYKKA  240
KMLMLLESFF ECKAKQSDEM DDGGEERESG DRGGKGKRKV GEELKEKNER NKKVATDFES  300
DSNLRKMLID EMNMNNLAQE QPDNFMESDA LAETRSQPSH FWTWHWRLTI TECFSLKTTG  360
RGYWVIPVAF YYTHEKMMVP EDLFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-21	77	166	29	129	Heat shock factor protein 1
5d5v_B	4e-21	77	166	29	129	Heat shock factor protein 1
5d5v_D	4e-21	77	166	29	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790212.1	1e-131	PREDICTED: heat stress transcription factor A-7b-like
TrEMBL	A0A1J6IKK0	1e-131	A0A1J6IKK0_NICAT; Heat stress transcription factor a-6a
STRING	XP_009790212.1	1e-131	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14099	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G63350.1	2e-28	HSF family protein