PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00618g00058.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 371aa    MW: 42298 Da    PI: 4.5706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00618g00058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19125174255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Peaxi162Scf00618g00058.1 125 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 174
                               89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-29124181IPR001471AP2/ERF domain
PROSITE profilePS5103223.657125182IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-21125181IPR016177DNA-binding domain
SMARTSM003801.7E-38125188IPR001471AP2/ERF domain
CDDcd000183.82E-33125181No hitNo description
PfamPF008471.0E-12125174IPR001471AP2/ERF domain
PRINTSPR003674.2E-10126137IPR001471AP2/ERF domain
PRINTSPR003674.2E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDHSMLCPIK YTEHRKTIRK VTKPSTIKPK KITEVRKSSE YNPNIPRTVR ISVTDPDATD  60
SSSDEEELFG RKRVKRYISE INIETSIKCE VTIPKNNNVK LAKQSRKKPV KVKQVQLPSD  120
GTVRKFRGVR QRPWGKWAAE IRDPARRVRL WLGTYDTAEE AAMVYDNAAI KLRGPDALTN  180
FITPPKKEET EEDVNVASNS GYESGDESHN LSSPTSVLRF RTSQSSEEAE QRSDCQPILE  240
EITKGDVHNE LILDSMDSEQ TVEHFECEGE TSTIPDYSHE YLPNDVPFLD DFFNFEAAEQ  300
TLFEDTTTTS FANDLCTSFD EISSWDFAND VLLNDEFGKF EDSFQDLGAL EVDHYFKDIC  360
DFSSVDALMA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21124181159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791967.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1U7XIT50.0A0A1U7XIT5_NICSY; ethylene-responsive transcription factor CRF4-like
STRINGXP_009791967.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-60cytokinin response factor 4