PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00612g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 504aa MW: 57393.2 Da PI: 10.7825 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 15 | 48 | 4 | 38 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38 W t+E+++l av+++G+++W+ +a+++ Rtl+ Peaxi162Scf00612g00210.1 15 WGTWEELILGGAVRRHGTNDWNVVASELR-SRTLY 48 9****************************.99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.47E-5 | 8 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-5 | 15 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-5 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-4 | 15 | 61 | No hit | No description |
PROSITE profile | PS50090 | 6.284 | 15 | 65 | IPR017877 | Myb-like domain |
SuperFamily | SSF47370 | 3.79E-18 | 264 | 375 | IPR001487 | Bromodomain |
SMART | SM00297 | 6.4E-17 | 271 | 375 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.55E-14 | 274 | 370 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 2.9E-16 | 274 | 395 | IPR001487 | Bromodomain |
Pfam | PF00439 | 2.4E-10 | 280 | 359 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.401 | 286 | 356 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MEGGVGPMRK KMNWWGTWEE LILGGAVRRH GTNDWNVVAS ELRSRTLYPF RFTPQACKAR 60 YEDLRKRYSG CTAWFEELRK RRVEELKREL ERSESSIGSL ESKIERLKAE RERSGQIDYG 120 LSHTESPAPL TKSEDIESSM KDEAKDGLSA GSFTLDIRTH RSPASQIPTI PSSTETDLIK 180 LERSESCERN KIQRINEVTE AANGNGGAVR KRRGKRRRKD TVWDAKEGSI EESDNVCSTS 240 LASTSHCKEV LTSCDQSIRH SAASNHRGGL SRFRNDDLMR IFNSITQHEA AMVFRHRLDS 300 QKRARYKKMI RRHMDIEIVR SRLASWSIKT PGELFRDFLL LANNAMVFYS KRTREYKAAM 360 ALRDIVTRAY RQHYKGSYYK ATSSLLPFPT IGNPPGKPRS VRPRPSKDKL QAKYGNNVKD 420 ISAGTLGGQN HRPSDADSKV PLQSLLTAKK GSKRPGKIKR GAINESVNPQ TKVLAKEATQ 480 HNVRTKEDHI IKPVTKEKKR ARQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 64 | 81 | RKRYSGCTAWFEELRKRR |
2 | 211 | 219 | RRGKRRRKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019262734.1 | 0.0 | PREDICTED: uncharacterized protein LOC109240533 | ||||
TrEMBL | A0A314L943 | 0.0 | A0A314L943_NICAT; Uncharacterized protein | ||||
STRING | XP_009778975.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5534 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 7e-15 | DNA-binding bromodomain-containing protein |