PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00611g00065.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 108aa MW: 11800 Da PI: 4.1144

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00611g00065.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.1	1.9e-12	3	48	3	48
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++++s r+ +s+ + ++KKA+ LS+LCd+eva++i ++ + e Peaxi162Scf00611g00065.1 3 SKSESERKALLSRNVASLFKKAQKLSILCDVEVALLISTPDECMAE 48 788999999999999**********************999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.942	4	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-10	4	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.5E-11	5	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MASKSESERK ALLSRNVASL FKKAQKLSIL CDVEVALLIS TPDECMAELA TFKMANVEEK 60 RKQLDEEDVQ PVEPPVAGDE SGTRPEPAEG DNNNAGEEKD DEHPEDSA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ168513	5e-33	FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B6DT65	3e-16	B6DT65_PETHY; Type I MADS box transcription factor (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14805	2	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-07	MIKC_MADS family protein