PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00582g00084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | Dof | ||||||||
Protein Properties | Length: 316aa MW: 35172 Da PI: 6.2205 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117 | 7.7e-37 | 15 | 70 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Peaxi162Scf00582g00084.1 15 PTCPRCGSINTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 70 57**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-23 | 7 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.481 | 15 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-31 | 16 | 69 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 17 | 53 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MERGIIWKPN VELAPTCPRC GSINTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPV 60 GGGCRKSRRG KSSSNIRSST DHGFISRNNL ARGIGLNNNP SIDQSTNSLT QGGDHHHQGP 120 SIDLALVYSN FLNSSKPQPE DHQLQQLELP ELLPNDRQLA VGPSFEFSSL INMEFTSTLG 180 QETQLSEGDA VYFSAIDGIE KHQTTMQHII NHNDHDQYTN MNMNTNINHE LGNYMQLPPL 240 PGEEGVSEGM VWSNPHDHMI FPNDILNTSQ LSVGGLEPAE LPAEPEKAQD PSHHHCVNAD 300 DGSLFSLSNI GNIFRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601936.1 | 1e-135 | PREDICTED: cyclic dof factor 5-like | ||||
TrEMBL | A0A314KSC4 | 1e-133 | A0A314KSC4_NICAT; Dof zinc finger protein dof3.5 | ||||
STRING | XP_009601936.1 | 1e-134 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12963 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 5e-36 | Dof family protein |