PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00575g00016.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 318aa    MW: 36100.5 Da    PI: 7.1109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00575g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101445132
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                              +g+WT+eEd +lv +++++G+g+W++++   g
  Peaxi162Scf00575g00016.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTG 45
                              79************************997655 PP
2Myb_DNA-binding44.14.6e-14101146148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T  E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Peaxi162Scf00575g00016.1 101 RGNFTSHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 146
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-22544IPR009057Homeodomain-like
SuperFamilySSF466895.74E-9843IPR009057Homeodomain-like
PROSITE profilePS5129410.427952IPR017930Myb domain
SMARTSM007175.1E-71397IPR001005SANT/Myb domain
PfamPF002497.8E-91444IPR001005SANT/Myb domain
CDDcd001671.22E-61695No hitNo description
Gene3DG3DSA:1.10.10.605.8E-227898IPR009057Homeodomain-like
SuperFamilySSF466891.5E-2081153IPR009057Homeodomain-like
PROSITE profilePS5129422.19296150IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2499151IPR009057Homeodomain-like
SMARTSM007172.2E-12100148IPR001005SANT/Myb domain
PfamPF002493.4E-12101146IPR001005SANT/Myb domain
CDDcd001674.68E-8103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGNSVGF TIFYILCSSL  60
LYYFLEYCYN EAISLFLKGL MRCSKSCRLR WTNYLRPGIK RGNFTSHEEG MIIHLQALLG  120
NKWAAIASYL PQRTDNDIKN YWNTHLKKKL KKFQATGLDS QSLAPSDSNT YQFSWNFHDS  180
KLQQNQNSST SSSSTLYASS TENISRLLEG WMRSSPNPST KNIDDEILHE NDQNQEVYKN  240
CESSWLHGGR NNTIGSTSIP KEYYKSVISE KSACDQSGGA VEKSCTNNAP PYTYLEKWLL  300
DESAGQVEEL MELPTIFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-211215025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755225e-48HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628670.11e-132PREDICTED: myb-related protein 306
RefseqXP_016498669.11e-132PREDICTED: myb-related protein 306-like
SwissprotB3VTV75e-97MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A1S4CCI61e-131A0A1S4CCI6_TOBAC; myb-related protein 306-like
STRINGXP_009628670.11e-132(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-92myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]