PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00566g00051.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 252aa    MW: 27845.8 Da    PI: 8.9404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00566g00051.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-193176147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Peaxi162Scf00566g00051.1 31 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 76
                              79*****************************9.***********985 PP
2Myb_DNA-binding53.94.1e-1785127347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +++  Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Peaxi162Scf00566g00051.1  85 PFSHAEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 127
                               7999****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6122681IPR017930Myb domain
SuperFamilySSF466892.56E-3129124IPR009057Homeodomain-like
SMARTSM007171.1E-163079IPR001005SANT/Myb domain
PfamPF002492.4E-183176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-253284IPR009057Homeodomain-like
CDDcd001677.94E-153375No hitNo description
PROSITE profilePS5129421.02482132IPR017930Myb domain
SMARTSM007177.2E-1582130IPR001005SANT/Myb domain
PfamPF002493.6E-1485127IPR001005SANT/Myb domain
CDDcd001673.82E-1185128No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2385131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENFNRCSTS TSSSSESSSS ESSLNKAERI KGPWSAEEDK ILTKLVERYG ARNWSLISKY  60
IKGRSGKSCR LRWCNQLSPN VQHRPFSHAE DETILAAHAK YGNRWATIAR LLPGRTDNAV  120
KNHWNSTLKR RYQQQKNHNT VIFPDMKNGS GSGSGSGSGS RSGSGSCMDY LNVDESPRGT  180
NVKVVVNNCN SEYDDPMTEL SLAPPGMGGD ELPERKTESF SAGFWDVMRD VIAKEVREYV  240
ASSFNGASTG FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-41281311104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237788.11e-128PREDICTED: transcription factor MYB44-like
TrEMBLA0A1J6KH951e-126A0A1J6KH95_NICAT; Transcription factor myb44
STRINGXP_009620130.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-56myb domain protein 77