PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00553g00531.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 408aa    MW: 47012.8 Da    PI: 6.2074
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00553g00531.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.2e-2395178189
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               ++Yn YA+evGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w++ ++ leH
  Peaxi162Scf00553g00531.1  95 NYYNCYAREVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRILEVTLEH 174
                               69*****************************************9988.....99******************************* PP

                      FAR1  86 nHel 89 
                               nH l
  Peaxi162Scf00553g00531.1 175 NHLL 178
                               **87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1995178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSHLFDSSHF QMEEASVDSD QDVTGQGSGR LQEIESDGLD DKNGEQIESD ELFVQSGGQI  60
ESDVLDDQNG VADGQKEFVA PAVGMEFESY DDAYNYYNCY AREVGFRVRV KNSWFKRNSK  120
EKYGAVLCCS SQGFKRIKDV NRLRKETRTG CPAMMRMRMV DSKRWRILEV TLEHNHLLGT  180
KAYKSIKKTV AGNKKKSDSN SDAEVRTIKL YRALVIDAAW RFMIQRFGVG DHEWLSSLYD  240
ERAKWAPVYL KDTFFAGMAT ARPNETLTSF FDKYVHKQTP LKEFLDKYEL ALQKKHKEEA  300
LADIESRNSN PELKTRCSFE LQLSKAYTGE IFKRFQLEVE EMYSCFSTTQ LHVDGQMVQW  360
FSQLYRSALQ VVEEGVTSLD HYKVALNAFE GSLTRVHQIE EKQNTNSL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258709.11e-132PREDICTED: protein FAR1-RELATED SEQUENCE 6 isoform X1
SwissprotQ9SSQ49e-73FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2P5YJ111e-152A0A2P5YJ11_GOSBA; Uncharacterized protein
STRINGXP_009766776.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.16e-69FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]