PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00536g00710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GATA | ||||||||
Protein Properties | Length: 247aa MW: 27851.3 Da PI: 7.7701 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.3e-18 | 178 | 212 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g ktLCnaCG++y++ +l Peaxi162Scf00536g00710.1 178 CQHCGVDKTPQWRGGPMGRKTLCNACGVRYKSGRL 212 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.057 | 172 | 208 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-17 | 172 | 222 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-15 | 174 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 175 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.00E-15 | 177 | 226 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.9E-16 | 178 | 212 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MKMEALDLTT CFMVDDDILN FSLDDDEKNA SSSSSSFESV GFLQDDHSRS FHECVEEELE 60 WLSNKDAFPA VEFDIFSDNV PNVIFDHHSP VSVLENSSGS SNTNTKENTF INSCGSLQVP 120 INYPVRARSK GMKRRRRTVF AELQSEHCVW GNQVNKQEFA LLSLPMTKAK RASIGRRCQH 180 CGVDKTPQWR GGPMGRKTLC NACGVRYKSG RLVPEYRPAN SPTFSPELHS NSHRKVLEMR 240 KQKIGVA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266575.1 | 1e-125 | PREDICTED: GATA transcription factor 1-like isoform X1 | ||||
TrEMBL | A0A314KZW5 | 1e-123 | A0A314KZW5_NICAT; Gata transcription factor 1 | ||||
STRING | XP_009758423.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 8e-43 | GATA transcription factor 1 |