PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00515g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 222aa    MW: 25447.3 Da    PI: 6.9228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00515g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W +eEde+l+  v+ lG ++W++ a+  g++R++k+c++rw +yl
  Peaxi162Scf00515g00013.1 14 KGSWHEEEDERLASIVAILGERRWDALAKASGLRRSGKSCRLRWMNYL 61
                              799*******************************************97 PP
2Myb_DNA-binding54.92e-1770112448
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                T++E+ l+v++ kqlG++ W++Ia+ ++ gRt++++k++w+++l
  Peaxi162Scf00515g00013.1  70 ITADEEHLIVKLQKQLGNK-WSKIAKQLP-GRTDNEIKNHWRSHL 112
                               59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.34961IPR017930Myb domain
SuperFamilySSF466894.97E-2712108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-201568IPR009057Homeodomain-like
CDDcd001679.25E-91661No hitNo description
PROSITE profilePS5129426.00962116IPR017930Myb domain
SMARTSM007173.1E-1466114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2369115IPR009057Homeodomain-like
PfamPF002497.5E-1570112IPR001005SANT/Myb domain
CDDcd001673.33E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAFQLTMQEE ELRKGSWHEE EDERLASIVA ILGERRWDAL AKASGLRRSG KSCRLRWMNY  60
LRPNLKHGYI TADEEHLIVK LQKQLGNKWS KIAKQLPGRT DNEIKNHWRS HLRKKSLIYE  120
QECCGSNTSK SGQISSASKS DSINTPNNST GDSISGKDDC SSADSNETGL SDWIPSWSYE  180
QSQMEHHMYL CRLNLCFCHP QCFSEDNNIS TWGDTSSSIW EQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-27111151104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-261111555158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-261111555158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444726.11e-116PREDICTED: transcription factor MYB48-like
TrEMBLA0A1S3XXP81e-114A0A1S3XXP8_TOBAC; transcription factor MYB48-like
STRINGXP_009625011.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-49myb domain protein 27