PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00496g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 28297.7 Da PI: 6.9241 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.1 | 1.4e-28 | 10 | 100 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +Caa +++ C++dC+lapyfpa+qpk f+n+h+lF +sn+l ll++l+++ +++a++s++yeA+ar ++PvyG+++ + l+q Peaxi162Scf00496g00005.1 10 PCAARNYMNIPCTSDCPLAPYFPADQPKVFENLHRLFDVSNILILLHQLDPSMKKAAVKSIIYEANARDKNPVYGCLSDTKFLNQ 94 7****************************************************************************99999998 PP DUF260 86 qleqlk 91 ++++ Peaxi162Scf00496g00005.1 95 VFNSTR 100 777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.4 | 9 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-27 | 10 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTLNNGTNQP CAARNYMNIP CTSDCPLAPY FPADQPKVFE NLHRLFDVSN ILILLHQLDP 60 SMKKAAVKSI IYEANARDKN PVYGCLSDTK FLNQVFNSTR NFKKSVHNLP LINKNINYKG 120 SHCQYSVNLF LRFNWILFRL QGNYGKPAAY NAYTDTVPRP SSTQRNAGYG DHYQYQYSCA 180 GGDSFQGNQQ MRGPGPQAVY DQRDLDQPTD LFYLDDDHFT EPPQPDIEQA QLQHSSIAHD 240 LCSLAMEVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-21 | 6 | 108 | 7 | 109 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-21 | 6 | 108 | 7 | 109 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-30 | LOB domain-containing protein 27 |