PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00472g00069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | AP2 | ||||||||
Protein Properties | Length: 440aa MW: 49079.6 Da PI: 7.0647 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7e-17 | 106 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d k+++lg f+ta Aa+a+++a+ k++g Peaxi162Scf00472g00069.1 106 SQYRGVTFYRRTGRWESHIWDG-----GKQVYLGGFDTAHAAARAYDRAAIKFRG 155 78*******************3.....5************************998 PP | |||||||
2 | AP2 | 39.4 | 1.5e-12 | 198 | 245 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkk 52 s+++GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k Peaxi162Scf00472g00069.1 198 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAAIK 245 79********.7******...5...334336**********99*********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-10 | 106 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-16 | 106 | 165 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-17 | 107 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-30 | 107 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.044 | 107 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.46E-12 | 107 | 165 | No hit | No description |
SuperFamily | SSF54171 | 6.41E-16 | 198 | 258 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-8 | 198 | 245 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-24 | 198 | 258 | No hit | No description |
PROSITE profile | PS51032 | 15.106 | 199 | 256 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-15 | 199 | 257 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-30 | 199 | 262 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 200 | 211 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 238 | 258 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MFDLNLSCDD VPEESDQLNE LSVTQMENSR TSSTIGDDDN SCSDHMSNCY TFDILKANRK 60 ESENLGSFVT KELLPLSLND QSMVLAQQQR LQVIKKSRRG PRSRSSQYRG VTFYRRTGRW 120 ESHIWDGGKQ VYLGGFDTAH AAARAYDRAA IKFRGLDADI NFNVSDYEED LKQMKNFSKE 180 EFLHILRRQS TGFSRGSSKF RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEIEAARAYD 240 KAAIKSNGRE AVTNFELSTY EGVLSSETAD TGGTSHNLDL RLGISPSSCA DNQHGNTSQM 300 GISQCRPGSN GLPEHREVLS SASTTPRSML LHGQHMLDQH PLHWNGPNDN LFPTFKGTAI 360 EKGLEVDTLS KWMRQDQNSY GGSPTAPFFS TAASSGFVNS AISGPSAVVH QLHFPSRALP 420 YHYSPSLTNE TFTLLLQELK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339057.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | B8AMA9 | 1e-100 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | A0A2H4FXU9 | 0.0 | A0A2H4FXU9_PETHY; BOB | ||||
STRING | PGSC0003DMT400028706 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 3e-97 | related to AP2.7 |