PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00461g00116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23410.2 Da PI: 9.9278 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5e-20 | 13 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ ae+Aa+a++aa+++++g+ Peaxi162Scf00461g00116.1 13 HYRGVRKRP-WGRYAAEIRDPCK---KTRVWLGTFDNAEDAARAYDAAAREFRGH 63 69*******.**********854...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.0E-32 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 13 | 71 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.83E-18 | 13 | 70 | No hit | No description |
Pfam | PF00847 | 8.6E-13 | 13 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.499 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-37 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTATATGKFK EMHYRGVRKR PWGRYAAEIR DPCKKTRVWL GTFDNAEDAA RAYDAAAREF 60 RGHKAKTNFP FPDSEMENKK YKNNNNNRDS DRSPSQNSTI DESSPPLDLR LGTAPTTATA 120 GAAVGLFSNG VGRFLFETPV VGGIVTGAPA VNHMFYLNAL KSFRGGSGGG DGGGDSGRIR 180 VKSESDSIDY LCKDVKPSRR LINLDLNFPP PENM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 10 | 71 | 2 | 64 | ATERF1 |
3gcc_A | 3e-21 | 10 | 71 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618542.1 | 2e-67 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_016448710.1 | 2e-67 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | E7FKW3 | 5e-66 | E7FKW3_TOBAC; Ethylene response factor 6b | ||||
STRING | XP_009618542.1 | 8e-67 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-26 | ethylene responsive element binding factor 4 |