PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00461g00026.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

HSF

Protein Properties

Length: 199aa MW: 23307.7 Da PI: 9.9401

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00461g00026.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.3	1.3e-34	25	120	2	103
HHHHHHHHHCTG...GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS HSF_DNA-bind 2 Flkklyeilede...elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 Fl k+y++le+e +++++sw+e+g+ fvv+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++ weF+h Peaxi162Scf00461g00026.1 25 FLLKTYDLLEEEnisGNNKVVSWNEEGTGFVVWSPDEFSEFMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFSH 100 9*******884445689*********************************************999.........* PP SXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 84 ksFkkgkkellekikrkkse 103 ++F++g k+ll ki rkks+ Peaxi162Scf00461g00026.1 101 EKFQRGCKHLLAKITRKKSD 120 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.4E-43	21	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.3E-35	22	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-29	22	117	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.4E-30	25	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-10	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-10	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MGTEALGTPE DLTTISRKIK CPAPFLLKTY DLLEEENISG NNKVVSWNEE GTGFVVWSPD 60 EFSEFMLPKY FKHNNFSSFI RQLNTYGFKK VASKRWEFSH EKFQRGCKHL LAKITRKKSD 120 PSAFPAYLKP SSDHQGNYTM AAKEKNITRQ LLMEENKNLR KERLELQMQI DHFKNLETKL 180 LQCLSNYVSS QQNKVRRLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdk_A	1e-17	21	119	7	112	Heat shock factor protein 2
5hdk_B	1e-17	21	119	7	112	Heat shock factor protein 2
5hdk_C	1e-17	21	119	7	112	Heat shock factor protein 2
5hdk_D	1e-17	21	119	7	112	Heat shock factor protein 2
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009588494.1	1e-103	PREDICTED: heat stress transcription factor B-2a-like
Refseq	XP_016448505.1	1e-103	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A1S3Y8P8	1e-102	A0A1S3Y8P8_TOBAC; heat stress transcription factor B-2a-like
STRING	XP_009588494.1	1e-102	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10707	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-44	heat shock transcription factor B2A