PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00447g00082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 216aa MW: 24662.7 Da PI: 7.4387 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100 | 1.6e-31 | 35 | 89 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k +YkeClkNhA+ +G+havDGCgEfm++ geegt +++kCaAC+CHRnFHR++ + Peaxi162Scf00447g00082.1 35 KPKYKECLKNHAVGIGSHAVDGCGEFMAA-GEEGTLESFKCAACNCHRNFHRKHIV 89 679*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 18 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-28 | 37 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.0E-28 | 37 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.1 | 38 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.79E-17 | 126 | 199 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 128 | 199 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.5E-25 | 138 | 195 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MDFEDKEIHD GRSGRPQTPP SPGELDTEAP LTMRKPKYKE CLKNHAVGIG SHAVDGCGEF 60 MAAGEEGTLE SFKCAACNCH RNFHRKHIVE ITTTYPLLTH HPYNHFPPPP YHHHHHQQLT 120 PLALPSTSGQ NDMSNGGKKR FRTKFSQEQK MKMQELAEKI GWRIQRQDDS IVQQFCDENG 180 VKRNVFKVWM HNNKQTLGKN LSLEPSNLNE AAEEEN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 8e-22 | 138 | 194 | 17 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246607.1 | 1e-78 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Swissprot | Q6YXH5 | 4e-63 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S3ZEH4 | 8e-76 | A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2 | ||||
TrEMBL | A0A1U7YG84 | 8e-76 | A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2 | ||||
STRING | XP_009802157.1 | 4e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-53 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|