PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00440g00049.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bZIP

Protein Properties

Length: 373aa MW: 42316 Da PI: 6.4428

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00440g00049.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.5e-10	88	128	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k+ rr+++NReAAr+sR+RKka++++Le+ +L + ++L Peaxi162Scf00440g00049.1 88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLEQEL 128 788*************************9766666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-7	83	130	No hit	No description
SMART	SM00338	2.9E-4	84	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.829	86	130	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	88	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-6	88	128	No hit	No description
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-29	175	249	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MNSSTYTQFV ASRRMGICEP IHQIDMWGDF NGSYPSTSTT MILEVEKCLE DQIPIMEQRL 60 DNETEDTSHG TVGISNRYEP ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LIQLEQELEK ARKQGLYVGG GLDASQLSYS GTASSGTAAF DMEYGHWVEE QNRQTNDLRG 180 ALHSQTSEVE LRTMVDGCLN HYFDLFRMKA TAAKADVLYI MSGMWKTSTE RFFMWIGGFR 240 PSELLKVLTP HLELLTEQQL HEVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGRLGEG 300 NYSLPQMGPA IEKLEALVRF VNQADHLRQE TLQQMSRILN THQAAQGLLA LGEYFERLRV 360 LSSHWATRLR EPA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MNSSTYTQFV ASRRMGICEP IHQIDMWGDF NGSYPSTSTT MILEVEKCLE DQIPIMEQRL  60
DNETEDTSHG TVGISNRYEP ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELEK ARKQGLYVGG GLDASQLSYS GTASSGTAAF DMEYGHWVEE QNRQTNDLRG  180
ALHSQTSEVE LRTMVDGCLN HYFDLFRMKA TAAKADVLYI MSGMWKTSTE RFFMWIGGFR  240
PSELLKVLTP HLELLTEQQL HEVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGRLGEG  300
NYSLPQMGPA IEKLEALVRF VNQADHLRQE TLQQMSRILN THQAAQGLLA LGEYFERLRV  360
LSSHWATRLR EPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	S73826	0.0	S73826.1 mas-binding factor MBF2=transcription factor TGA1a homolog [Solanum tuberosum=potatoes, root, mRNA, 1477 nt].

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254296.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
Refseq	XP_019254297.1	0.0	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
Swissprot	P14232	0.0	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A1J6HZ96	0.0	A0A1J6HZ96_NICAT; Tgacg-sequence-specific dna-binding protein tga-1a
STRING	XP_009593001.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-147	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]