PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00391g00048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | TCP | ||||||||
Protein Properties | Length: 411aa MW: 43648.9 Da PI: 8.5455 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.2 | 2.1e-40 | 101 | 206 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s Peaxi162Scf00391g00048.1 101 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTIS 185 6799****************************************************************99977777777776333 PP TCP 87 sg..................k 89 ++ Peaxi162Scf00391g00048.1 186 APpsksaplflhggatamlgF 206 333333334433333333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.705 | 106 | 160 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.9E-38 | 106 | 215 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MEPHRKKQGG GSSSNSGSEQ HHQHHQHAQQ QHNQETPSSL QLVSLNHQSQ PNDPPTPGSN 60 QPHPHGPFMG GSMQSRTNTT ALLSPSSTTT PNTTTTLSTK VAKKPSKDRH TKVDGRGRRI 120 RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRSS 180 GTTISAPPSK SAPLFLHGGA TAMLGFHHQL TNPGFGQDPD DNYMKKRFRE DTSGATSPSA 240 DKPERTGVEG TEPGSESNKP GSSQPSSYIP APAMWAVAAP GAGNVGNAFW MLPVSGGSGS 300 ATASVGVAQP DQQFWQYKAG SAMQRIGGFE FPGGSRFNPV QLGSMVPVQQ LGLGVSETNM 360 GILSSMNAYN NNSGNNRIDL GMNLEQHQNH HHHSQTQGSD SGDENHKDSQ S |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00614 | PBM | Transfer from AT1G35560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009775051.1 | 0.0 | PREDICTED: transcription factor TCP23-like | ||||
Swissprot | Q9LQF0 | 1e-73 | TCP23_ARATH; Transcription factor TCP23 | ||||
TrEMBL | A0A1U7WCU1 | 0.0 | A0A1U7WCU1_NICSY; transcription factor TCP23-like | ||||
STRING | XP_009775051.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 3e-62 | TCP family protein |