PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00389g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | AP2 | ||||||||
Protein Properties | Length: 506aa MW: 56458.3 Da PI: 6.7081 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.2 | 3.6e-12 | 167 | 220 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgk....fgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Peaxi162Scf00389g00028.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGMyysgFDTAHAAARAYDRAAIKFRG 220 78*******************......559999997333369999************997 PP | |||||||
2 | AP2 | 41.1 | 4.4e-13 | 263 | 313 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Peaxi162Scf00389g00028.1 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 313 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-6 | 167 | 220 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-13 | 167 | 229 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-14 | 168 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-29 | 168 | 234 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.659 | 168 | 228 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-25 | 263 | 323 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-17 | 263 | 322 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-8 | 263 | 313 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-15 | 264 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 264 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-32 | 264 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 265 | 276 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 303 | 323 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MMLDLNLSAI YDEKVGEIAV ADESGTSNSS ARNAEASSSA GDDDSCSTRA AGDLFAFNFD 60 ILKVGGAETS RSFSINNDEE VYDENHMRMA RPDVVTQQFF PVDTAESNRA HHTSRRPDWV 120 DLSYDPPNTL GFREVGIVHP QQQQYQQQQQ QQQPVKKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGMYYSG FDTAHAAARA YDRAAIKFRG VDADINFNLS DYDEDMKQMK 240 NLSKEEFVHM LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA 300 ARAYDKAAIK CNGREAVTNF EPSTYEGETI SDPRSEGSQQ NLDLNLGIST SSAKEIERSG 360 GFQYHPYDMQ DTTKLQMDKS GPAIVSSSHF KAQPVTSEQA HLWNGVYSNF FPSYEERASG 420 KRVEVGSSQG PPSWVMQMHG QVGTTPMSMF TAAASSGFSS PATIASASPI SGPNPNIHNL 480 SFATYSTPST NTSQYFYQIR PPLPPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784819.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Refseq | XP_016501408.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | B8AXC3 | 1e-105 | AP21_ORYSI; APETALA2-like protein 1 | ||||
Swissprot | Q8H443 | 1e-105 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A220QTH6 | 0.0 | A0A220QTH6_PETAX; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_009784819.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-106 | related to AP2.7 |
Publications ? help Back to Top | |||
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