PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00384g00066.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 222aa    MW: 25660.8 Da    PI: 9.0577
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00384g00066.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.89.6e-359103195
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aCa+Ck++r+kC+++C+lapyfpae++++f++vhk+FG+sn++k++k+l+e++r++a++sl++eA +r++dP+ G +g ++++ +
  Peaxi162Scf00384g00066.1   9 ACASCKHQRKKCTEKCALAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDDRRKAVESLIWEAFCRQKDPIFGPYGEYKRVYE 93 
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaela 95 
                               +l+  k++ +
  Peaxi162Scf00384g00066.1  94 ELKLYKSQYQ 103
                               *999998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0558109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-339104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQKPNGTAAC ASCKHQRKKC TEKCALAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED  60
DRRKAVESLI WEAFCRQKDP IFGPYGEYKR VYEELKLYKS QYQQILQVPI SQGSNSNNNN  120
AMVYEAAQGL INGWNINKRN DNSLYINENS IVESWSSYNN KNPVHHVQNI EKLRTENSNG  180
SIVIVPQQHQ AYNEFNQQFY LAGQYNTIDA KPRESMLWED NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-22486688LOB family transfactor Ramosa2.1
5ly0_B2e-22486688LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770460.11e-136PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A1U7W8841e-135A0A1U7W884_NICSY; LOB domain-containing protein 2-like
STRINGXP_009770460.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-44LOB domain-containing protein 2