PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00377g00043.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 252aa    MW: 28489.1 Da    PI: 5.9786
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00377g00043.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18170204135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Peaxi162Scf00377g00043.1 170 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 204
                               *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-842249IPR016679Transcription factor, GATA, plant
Gene3DG3DSA:3.30.50.102.7E-14164201IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.503164200IPR000679Zinc finger, GATA-type
SMARTSM004018.2E-16164214IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-15165228No hitNo description
CDDcd002021.78E-14169216No hitNo description
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
PfamPF003206.6E-16170204IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVYGVSAPD LFRIDDLLDF SNDEIFSITT NSSTTHDSQH HHHQPHSDNS SSAATNYYYD  60
GLPNSSDDFT DNLGVPSEDV AELEWLSNFV EDSFSNFPTN SVTGTMNLSS NTTSFHGRSR  120
SKRSRSTSNW TTSSLQNPNT TNNITTMKIK QESSAINTGE IMDEDVPRRC THCASEKTPQ  180
WRTGPLGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTQ HSNSHRKVME LRRQKEMYQP  240
QTEEEMYGYR YC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347916.11e-123PREDICTED: GATA transcription factor 4
SwissprotO497411e-74GATA2_ARATH; GATA transcription factor 2
TrEMBLM1CGF51e-121M1CGF5_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000669531e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-66GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]