PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00370g00058.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 335aa    MW: 36838.6 Da    PI: 7.9544
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00370g00058.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17239272134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Peaxi162Scf00370g00058.1 239 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                               99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.4E-753329IPR016679Transcription factor, GATA, plant
SMARTSM004011.1E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-15237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15237296No hitNo description
CDDcd002022.19E-13238285No hitNo description
PfamPF003202.3E-15239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGPNLVEEID CGNFFDQIDD LIEFPEDNEC VGLSSTDCKD FPSIWDQPLP DSDPLFSHNS  60
PSDLSAELSV PYEDIVQLEW LSTFVEDSFS CGGLTLGKEN ALTISKETSH SKFQSSSPVS  120
VLESSSSSSS SSCSGGKRVP LSPYHHGPQR ARSKRPRPAT FNPRPAIQLI SPTSVFIENP  180
RPFVAPVASS ESETFAESPM KKFPKLPAAE QKKKKIKLTF PLALLEANRN STAQAVRKCM  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSLH SNSHKKVIEM  300
RNKDIPKNNA TTRTPIRAKT TQLEINPSSK SPGED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755166e-66HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760862.11e-180PREDICTED: GATA transcription factor 8-like
RefseqXP_009760863.11e-180PREDICTED: GATA transcription factor 8-like
RefseqXP_016497965.11e-180PREDICTED: GATA transcription factor 8-like
RefseqXP_016497966.11e-180PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1S4CA081e-179A0A1S4CA08_TOBAC; GATA transcription factor
TrEMBLA0A1U7UXU61e-179A0A1U7UXU6_NICSY; GATA transcription factor
STRINGXP_009760862.11e-179(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.29e-41GATA transcription factor 11