PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00361g00101.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

GRAS

Protein Properties

Length: 514aa MW: 56750.4 Da PI: 5.0651

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00361g00101.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.6	1.1e-127	150	513	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 lv++L++cA ++ g+++la +l+ +l+ l a ++++ + ++a yf++AL++rl+ +s + ++ s++ e+ + + Peaxi162Scf00361g00101.1 150 LVHVLMTCAASIQRGEFSLAGSLIDQLQALltAMNTDSGIGKVAGYFVNALSQRLFAPQSACL--INGSAS------ENETLYYN 226 689************************9867777799**************444443..333333......34455668 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 f+e+sP+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa R++gpp+lR+Tg+g+p+s+ +++l+e+g +La++ Peaxi162Scf00361g00101.1 227 FYEASPCLKFAHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRSGGPPMLRLTGIGPPSSDGRDSLREIGLKLAEL 311 ********************************************************************************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 A++++v+f f+ ++a+rl+d+++++L++ + +E++aVn+++qlh+ll ++ ++ d+vL+ ++sl+Pkvv++veqea+hn+ + Peaxi162Scf00361g00101.1 312 ARSVNVRFAFRGVAATRLDDVKPWMLQITSsKEVVAVNSIMQLHKLLGQNPGSPI--DSVLDWMRSLNPKVVTIVEQEANHNQLE 394 *********999********999************77766666..************************ PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 Fl+rf+eal+yys++fdsle+ ++ ++ + +++++rei+n+v+ceg r+erhe + kWr+rl++aGFkp++l+++a kqa Peaxi162Scf00361g00101.1 395 FLDRFTEALYYYSTMFDSLESC---PAQPEKALAEMYIQREICNIVCCEGLTRVERHEPMPKWRARLSRAGFKPLHLGSNAFKQA 476 ***************999...466677788888******************************************** PP GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ll ++ +gy vee++g+l+lgW++rpL+++SaW+ Peaxi162Scf00361g00101.1 477 SMLLTLFSAEGYCVEENEGCLTLGWHSRPLIAASAWQ 513 **********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	6.0E-26	31	97	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	7.9E-17	31	104	No hit	No description
PROSITE profile	PS50985	61.108	124	493	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-125	150	513	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MSPQDSSITS SSSSSSSCPT HLNPPDHQQM DNLLAGAGYV VRSSELGQVA QRLEHLENVM 60 VNNPIMSMEI ANDLVHYNPS DLGSWVDSLL NELHDNQPLL DFPAVPWDPS YVIVNSNVVS 120 GPSATWTDKN QEPQQLTITT REQEDSGIRL VHVLMTCAAS IQRGEFSLAG SLIDQLQALL 180 TAMNTDSGIG KVAGYFVNAL SQRLFAPQSA CLINGSASEN ETLYYNFYEA SPCLKFAHFT 240 ANQAILEAFQ GHDCVHVIDF NLMHGLQWPA LIQALALRSG GPPMLRLTGI GPPSSDGRDS 300 LREIGLKLAE LARSVNVRFA FRGVAATRLD DVKPWMLQIT SSKEVVAVNS IMQLHKLLGQ 360 NPGSPIDSVL DWMRSLNPKV VTIVEQEANH NQLEFLDRFT EALYYYSTMF DSLESCPAQP 420 EKALAEMYIQ REICNIVCCE GLTRVERHEP MPKWRARLSR AGFKPLHLGS NAFKQASMLL 480 TLFSAEGYCV EENEGCLTLG WHSRPLIAAS AWQS

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MSPQDSSITS SSSSSSSCPT HLNPPDHQQM DNLLAGAGYV VRSSELGQVA QRLEHLENVM  60
VNNPIMSMEI ANDLVHYNPS DLGSWVDSLL NELHDNQPLL DFPAVPWDPS YVIVNSNVVS  120
GPSATWTDKN QEPQQLTITT REQEDSGIRL VHVLMTCAAS IQRGEFSLAG SLIDQLQALL  180
TAMNTDSGIG KVAGYFVNAL SQRLFAPQSA CLINGSASEN ETLYYNFYEA SPCLKFAHFT  240
ANQAILEAFQ GHDCVHVIDF NLMHGLQWPA LIQALALRSG GPPMLRLTGI GPPSSDGRDS  300
LREIGLKLAE LARSVNVRFA FRGVAATRLD DVKPWMLQIT SSKEVVAVNS IMQLHKLLGQ  360
NPGSPIDSVL DWMRSLNPKV VTIVEQEANH NQLEFLDRFT EALYYYSTMF DSLESCPAQP  420
EKALAEMYIQ REICNIVCCE GLTRVERHEP MPKWRARLSR AGFKPLHLGS NAFKQASMLL  480
TLFSAEGYCV EENEGCLTLG WHSRPLIAAS AWQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-59	133	512	2	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192394.1	0.0	PREDICTED: DELLA protein DWARF8-like
Swissprot	Q9LQT8	1e-155	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A498KHD3	0.0	A0A498KHD3_MALDO; Uncharacterized protein
STRING	XP_008343960.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15141	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-157	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]