PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00354g00048.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 284aa    MW: 31933.8 Da    PI: 9.7234
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00354g00048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18147180134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C+ C+ttkTplWR gp g+k+LCnaCG+++rk +
  Peaxi162Scf00354g00048.1 147 CADCNTTKTPLWRGGPKGPKSLCNACGIRQRKAR 180
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.2E-19141192IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-12144182No hitNo description
PROSITE profilePS5011412.308145177IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15145181IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.36E-11146176No hitNo description
PfamPF003202.4E-16147180IPR000679Zinc finger, GATA-type
PROSITE patternPS003440147172IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTPNYRNFPP IFPFELNSED HDLSHPLVSP NYQASSSSSH SSCQMFFNSA TQYQTGHHDH  60
TEFFLPEYQP KVDNYASSGG SYDLEKKNKA ESDINLTLWK RKDRDEKNMR LKQKLEDQKQ  120
QSSTRLETDH SSNSSSNNSN NFPIRVCADC NTTKTPLWRG GPKGPKSLCN ACGIRQRKAR  180
KAMAAAAAAA EGTTLTTEKS TVGKIKLKKK EKTTNLIATN HIKPYKKRWR LLDTTDGSSS  240
SSDSQNKKLR FEDLFTNLSK KLAVNFPEDE KEAAILLMAL SCGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488017.12e-76PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4BGN54e-75A0A1S4BGN5_TOBAC; putative GATA transcription factor 22
STRINGXP_009604300.18e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-17cytokinin-responsive gata factor 1