PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00350g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 275aa    MW: 30939.2 Da    PI: 7.8677
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00350g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18186220135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Peaxi162Scf00350g00013.1 186 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 220
                               *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.2E-812272IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.266180216IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-15180230IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-14182244No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13184218IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.45E-13185232No hitNo description
PROSITE patternPS003440186211IPR000679Zinc finger, GATA-type
PfamPF003207.8E-16186220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDVYGGSAPE VFRIDDLLDF SNEEIFSSGS SSKTTDFDLN HQYQPHQLHT DNNAAASYYD  60
ALVPNSADFT DKLCVPSDDV AELEWLSNFV EDSSSDYPSN SLTGTINLNS NNTTLHSKSR  120
SKRSRATTAN TSWTTSLQQA HKPIHEKSNQ DPQNNNNNTM MIKIKKESSV NSRERSCQMP  180
DIPRKCTHCA SEKTPQWRTG PLGPKTLCNA CGVRFKSGRL VPEYRPAASP TFVLTQHSNS  240
HRKVMELRRQ KGVVHQQQHQ PPQQQGMYGH HFQVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591827.11e-147PREDICTED: GATA transcription factor 4-like
RefseqXP_016439221.11e-147PREDICTED: GATA transcription factor 4-like
SwissprotO497411e-74GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1S3XH151e-146A0A1S3XH15_TOBAC; GATA transcription factor
STRINGXP_009591827.11e-146(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.13e-67GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]