PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00346g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27711.7 Da PI: 10.5144 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.8 | 5.1e-10 | 1 | 54 | 36 | 89 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 ++l+de r W+v + r +++++ + +GW++F angL++gD F+l+++ + Peaxi162Scf00346g00002.1 1 MILKDEAQRPWSVWI-GRVSGRHFGIIRGWSKFRAANGLQVGDAYKFELIKNgKI 54 5799**********9.45555558899**********************987554 PP | |||||||
2 | B3 | 52.2 | 1.1e-16 | 123 | 211 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++++ +++ l++p++fa e +++++ +++++d + rsW+ kl +++r+++++GW +F+ n LkegD ++F++++ ++ Peaxi162Scf00346g00002.1 123 TIQPSSISRHYLRVPRQFALESCLNNRK-CEIIVRD-ERRSWTCKL--YTSGRRTYIGSGWHKFCIVNCLKEGDRLMFEMVS-NG 202 57889999999*******9998555444.4999999.779******..999999*************************988.66 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v++++ Peaxi162Scf00346g00002.1 203 EKPVLRLYG 211 667887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-10 | 1 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.055 | 1 | 62 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-8 | 1 | 56 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.23E-9 | 1 | 52 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-9 | 1 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-20 | 116 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-20 | 117 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-15 | 118 | 210 | No hit | No description |
PROSITE profile | PS50863 | 12.407 | 119 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-15 | 120 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-15 | 123 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MILKDEAQRP WSVWIGRVSG RHFGIIRGWS KFRAANGLQV GDAYKFELIK NGKIPEAYFH 60 HLRGSPSLQP EGKKKDFDVK RISNKGLDSQ EKPESNIKKS GKVFPNVEAS KDMHLSHPHF 120 ICTIQPSSIS RHYLRVPRQF ALESCLNNRK CEIIVRDERR SWTCKLYTSG RRTYIGSGWH 180 KFCIVNCLKE GDRLMFEMVS NGEKPVLRLY GKQFGKDDKN HRSNRQDNKT VGVHGQGKEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792889.1 | 2e-70 | PREDICTED: B3 domain-containing protein REM7-like | ||||
Refseq | XP_016548731.1 | 3e-70 | PREDICTED: B3 domain-containing protein REM10-like isoform X4 | ||||
TrEMBL | A0A1U7Y0W9 | 4e-69 | A0A1U7Y0W9_NICSY; B3 domain-containing protein REM7-like | ||||
TrEMBL | A0A1U8EQP7 | 8e-69 | A0A1U8EQP7_CAPAN; B3 domain-containing protein REM10-like isoform X4 | ||||
STRING | XP_009792889.1 | 7e-70 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 4e-20 | B3 family protein |