PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00305g00129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 574aa MW: 62931 Da PI: 4.8877 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 445.8 | 3e-136 | 188 | 564 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv++L++cAeav++++++la+al+ ++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ +++l++ f+ Peaxi162Scf00305g00129.1 188 LVHTLMACAEAVQQENFNLADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDQIESSYTDVLQM--HFY 262 689***************************************************9........44555554455555444..4** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e++P+lkf+h+taNqaIlea++++++vH+iDf+++qG+QWpaL+qaLa R+ gpp +R+Tg+g+p+++++++l+++g++La++Ae Peaxi162Scf00305g00129.1 263 ETCPYLKFAHFTANQAILEAFNNCNKVHVIDFSLKQGMQWPALMQALALRACGPPAFRLTGIGPPQPDNSDALQQVGWKLAQLAE 347 ************************************************************************************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 ++gv+fef+ +va++l+dl+ L++++ Ea+aVn+v++lhrll++++ le+ v++ +k ++Pk+v++veqea+hn+e F++ Peaxi162Scf00305g00129.1 348 TIGVEFEFRGFVANSLADLDATILDIRETEAVAVNSVFELHRLLARPGGLEK----VMSSIKLMKPKIVTIVEQEANHNAEMFMD 428 ****************************************************....***************************** PP GRAS 256 rflealeyysalfdsleak..................lpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 rf eal+yys++fdsle++ + ++++ ++++++lgr+i+nvvaceg +r+erhetl++Wr r+++a Peaxi162Scf00305g00129.1 429 RFNEALHYYSTMFDSLESSssssptttsssstgqqpiV--VNNQDLVMSEVYLGRQICNVVACEGVDRVERHETLSQWRVRMNSA 511 ****************9888999999999887765431..35999**************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 GF pv+l+++a+kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+ Peaxi162Scf00305g00129.1 512 GFAPVHLGSNAYKQASMLLALFAgGHGYRVEENDGCLMLGWHTRPLIATSAWQ 564 ****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 2.5E-35 | 31 | 104 | No hit | No description |
Pfam | PF12041 | 2.9E-35 | 31 | 98 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 66.613 | 162 | 543 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-133 | 188 | 564 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MKRDRDREKS QVLGKSKIWE EEEQQPDAGM DELLAVLGYK VKSSDMAEVA QKLEQLEMAM 60 GTTLEDGINH LSTDTVHKNP SDLSGWVQSM LSELNNTSSI STNFDMAGST TGGVENALNI 120 SSSMNIINDD DLRAIPGGAV FVNNELEDAQ TSHKRLRSSP SSAGSSASFL TDSRPVVLVD 180 SQETGVRLVH TLMACAEAVQ QENFNLADAL VRHIGILAVS QSGAMRKVAT YFAEALARRI 240 YKIYPQDQIE SSYTDVLQMH FYETCPYLKF AHFTANQAIL EAFNNCNKVH VIDFSLKQGM 300 QWPALMQALA LRACGPPAFR LTGIGPPQPD NSDALQQVGW KLAQLAETIG VEFEFRGFVA 360 NSLADLDATI LDIRETEAVA VNSVFELHRL LARPGGLEKV MSSIKLMKPK IVTIVEQEAN 420 HNAEMFMDRF NEALHYYSTM FDSLESSSSS SPTTTSSSST GQQPIVVNNQ DLVMSEVYLG 480 RQICNVVACE GVDRVERHET LSQWRVRMNS AGFAPVHLGS NAYKQASMLL ALFAGGHGYR 540 VEENDGCLML GWHTRPLIAT SAWQLTAAAG GGES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-63 | 183 | 563 | 14 | 378 | Protein SCARECROW |
5b3h_A | 3e-63 | 183 | 563 | 13 | 377 | Protein SCARECROW |
5b3h_D | 3e-63 | 183 | 563 | 13 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796771.1 | 0.0 | PREDICTED: DELLA protein GAI-like | ||||
Swissprot | Q7Y1B6 | 0.0 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A1U7Y488 | 0.0 | A0A1U7Y488_NICSY; DELLA protein GAI-like | ||||
STRING | XP_009796771.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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