PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00301g00012.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 521aa    MW: 58405.1 Da    PI: 6.0152
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00301g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.82.2e-11127935
                      GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                              TplWR+gp  ++ LCnaCG ++r kg+
  Peaxi162Scf00301g00012.1  1 TPLWRNGPPEKPVLCNACGSRWRTKGT 27
                              9*******88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003204.1E-9127IPR000679Zinc finger, GATA-type
SMARTSM004010.0077141IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-7127IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.30E-11140No hitNo description
SuperFamilySSF577161.52E-5131No hitNo description
PfamPF139196.9E-11273354IPR028020ASX homology domain
PfamPF165505.6E-10273363IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
TPLWRNGPPE KPVLCNACGS RWRTKGTLTN YTPLHARAEP DDFEDYRVSR VKNLPMKNKE  60
VKVLKRKKNH DNPEIGFLPD YNQGFHRKGI DEDTGNRSSS GSAVSNSESC AQFGSAEASD  120
LTGPNQSNIW DTMVPSRKRT CIDRPKQSSV EKLTKDLYTI LHEQQQCSYF SESSEEDLLF  180
ESDKPMVSVE IGHGSVLIRH PSSIGREEES EASSLSVENE HHSVNEAYSQ LTTPPINIIK  240
GVNSSNPVTE RINNPTGKGL EQDQIKRGKD HLENLQLLGH HNSPLRHIDL KDVLNYEEFT  300
RHLSSDEQQQ LLKYLPPVDS FSAPQSLRSM FDSSQFEENL SSFQKLLEEG VFDNSLSGVT  360
VEECRTLKQF MLCYLMKSKW VEQFNLLKDM KCKNTSSGSE VAGESIVIGA RHSVNMKRPC  420
NGQYPKYSGV NATMKSPKRV VTESNYEQKE IVENDSSSFS PRSLFALPFE NSFSFANESS  480
DQELLLDVPS NSSFPQAELL LPTASFAAHA STTSIPIPRS A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-137HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085914.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-132GAT26_ARATH; GATA transcription factor 26
TrEMBLM1CHE60.0M1CHE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000675060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-117GATA transcription factor 26