PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00287g00115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | DBB | ||||||||
Protein Properties | Length: 311aa MW: 34663.8 Da PI: 6.7627 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.5e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++lfC ++ lCe+C H+ H+ Peaxi162Scf00287g00115.1 4 QCDVCNNNEASLFCVADEAALCESCDHRVHHAnklagkHQ 43 7**************************9964446777776 PP | |||||||
2 | zf-B_box | 28.2 | 3.9e-09 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C ++Hk Ht Peaxi162Scf00287g00115.1 54 QVPLCDICQERRAFLFCQQDRAILCRECDISIHKAneHT 92 6789*****************************878865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.921 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.49E-8 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.523 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.10E-12 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MKIQCDVCNN NEASLFCVAD EAALCESCDH RVHHANKLAG KHQRFSLLQP SSKQVPLCDI 60 CQERRAFLFC QQDRAILCRE CDISIHKANE HTQKHNRFLL TGVKLSANSS LYSPSVTSST 120 NSLTTNQDSA PNLKSQNSTK MPLQLPISVS VSSNISQEFA VAANDKGNDC QLMNLGGNNS 180 TSSISEYLEM IPGWHVEEFL NSSNIPNGFC KIGDNDVFPI WDTEIESNLS SFSPESIGTW 240 VPQAPAIATP QQYHTQNFPP QYLNFGGQIE FKNIKEVTSI KSSRKWRDDN SFAVPQISPP 300 STSFKRSRTL W |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780919.1 | 0.0 | PREDICTED: probable salt tolerance-like protein At1g75540 | ||||
Refseq | XP_016458633.1 | 0.0 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 1e-87 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1S3Z2M7 | 0.0 | A0A1S3Z2M7_TOBAC; B-box zinc finger protein 21-like | ||||
TrEMBL | A0A1U7X218 | 0.0 | A0A1U7X218_NICSY; probable salt tolerance-like protein At1g75540 | ||||
STRING | XP_009780919.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-85 | salt tolerance homolog2 |